Publications

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Title Cited by Year
Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain contributes to cellular variance of genomic content 2025
Machine learning‐based identification of general transcriptional predictors for plant disease 3 2025
Highly dynamic supernumerary mini-chromosomes in a Magnaporthe oryzae strain 1 2024
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen 13 2024
Rapid mini‐chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia 24 2024
Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases 6 2024
Dynamic Genomes-Mechanisms and consequences of genomic diversity impacting plant-fungal interactions 7 2023
Epigenetic regulation of nuclear processes in fungal plant pathogens 14 2023
Machine learning general transcriptional predictors of plant disease 2 2023
Natural genomic variation in rice blast genomes is associated with specific heterochromatin modifications 1 2023
Three-dimensional chromatin organization promotes genome evolution in a fungal plant pathogen 3 2023
CRISPR guides induce gene silencing in plants in the absence of Cas 59 2022
CRISPR-Cas12a induced DNA double-strand breaks are repaired by multiple pathways with different mutation profiles in Magnaporthe oryzae 39 2022
CRISPR-Cas12a ribonucleoprotein-mediated gene editing in the plant pathogenic fungus Magnaporthe oryzae 15 2022
Inferring functional communities from partially observed biological networks exploiting geometric topology and side information 17 2022
Local Rather than Global H3K27me3 Dynamics Are Associated with Differential Gene Expression in Verticillium dahliae 21 2022
The contribution of DNA repair pathways to genome editing and evolution in filamentous pathogens 41 2022
CRISPR-Cas12a induced DNA double-strand breaks are repaired by locus-dependent and error-prone pathways in a fungal pathogen 5 2021
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae 77 2021
Local rather than global H3K27me3 dynamics associates with differential gene expression in Verticillium dahliae 2021
Rhg1 mediated resistance to soybean cyst nematode 2021
RNA silencing by CRISPR in plants does not require Cas13 2 2021
Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence 15 2021
A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen 47 2020
Centromere evolution in the fungal genus Verticillium 2 2020
Chromatin features define adaptive genomic regions in a fungal plant pathogen 8 2020
CRISPR-Cas RNA Targeting Using Transient Cas13a Expression in Nicotiana benthamiana 11 2020
DNA methylation in Verticillium dahliae requires only one of three putative DNA methyltransferases, yet is dispensable for growth, development and virulence 2 2020
Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium 43 2020
Rhg1 mediated resistance to soybean cyst nematode 2020
RNAseq analysis of rhizomania-infected sugar beet provides the first genome sequence of beet necrotic yellow vein virus from the USA and identifies a novel alphanecrovirus and … 14 2020
Developing CRISPR-Cas13 for multi-use RNA-targeting in plants 2019
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus 141 2019
Long-read annotation: automated eukaryotic genome annotation based on long-read cDNA sequencing 68 2019
Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield 65 2019
Regulation of fungal effector gene expression during infection through chromatin dynamics 2019
A Near-Finished Reference Genome for the Wheat Blast Fungus Provides Insight on Pathogenicity and Adaptation 2018
CRISPR-Cas mediated RNA modulation for improved plant defense 4 2018
Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease 164 2018
Targeting microbial pathogens 5 2018
Chromatin biology impacts adaptive evolution of filamentous plant pathogens 41 2016
HOST-MICROBE CO-EVOLUTION 2016
Mind the gap; seven reasons to close fragmented genome assemblies 126 2016
SYSTEMS BIOLOGY AND MODELING 2016
Understanding Plant Immunity as a Surveillance System to Detect Invasion 626 2015
Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode 169 2014
Characterizing Rhg1 mediated soybean resistance to soybean cyst nematode using functional and computational approaches 2013
Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean 755 2012
Identification of genes at the Rhg1 locus of soybean that impact soybean cyst nematode development 2012
A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1locus LRR-Kinase on soybean cyst nematode resistance 119 2010
Candidate gene silencing in Glycine max using amiRNA to identify soybean cyst nematode resistance gene (s) at the Rhg1 locus 2010
Seed coat deficiency, trait stability, and other soybean seed quality traits for natto cultivar development 8 2010
Assessing Genetic and Environmental Influence on Traits Associated with Natto Quality 2008
Genotype-by-Environment Influence on the Traits Associated with Natto Quality 2 2008